SNP Profiles matching AMAZ 3/2 [CHA]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
1._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
2._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
3._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
4._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
5._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
6._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
7._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
8._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
9._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
10._AMAZ_3_/2	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC
11._AMAZ_3_/2	_	_	AA	GT	_	_	AA	GG	AA	_	_	AT	CC	CC
12._GC-03-022-2-11	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
13._GC-03-022-2-11	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
14._GC-03-022-2-11	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
15._GC-03-022-2-11	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
16._GC-03-022-2-11	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
17._GC-03-022-2-11	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
18._GC-03-022-2-11	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
19._GC-03-022-2-11	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
20._GC-03-022-2-11	TT	CC	AA	GT	_	GG	AA	GG	AA	GG	GG	AT	CC	CC
21._GC-03-022-2-11	TT	CC	AA	GT	CC	GG	AA	GG	AA	GG	GG	AT	CC	CC
22._RUQ_91	_	_	AA	GT	CC	_	AA	GG	AA	_	_	AT	CC	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	AA	TT
1._AMAZ_3_/2	CC	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
2._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
3._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
4._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
5._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
6._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
7._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
8._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
9._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
10._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
11._AMAZ_3_/2	_	AA	_	CC	_	GT	_	_	CC	AA	CC	_	_	_
12._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
13._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
14._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
15._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
16._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
17._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
18._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
19._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
20._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
21._GC-03-022-2-11	_	AA	TT	CC	TT	GT	TT	CG	CC	AA	CC	GG	GG	TT
22._RUQ_91	CC	AA	_	CC	_	GT	_	_	CC	AA	CT	_	_	_

	29	30	31	32
_Input profile	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._AMAZ_3_/2	TT	_	CC	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._AMAZ_3_/2	TT	_	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-03-022-2-11	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-03-022-2-11	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-03-022-2-11	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-03-022-2-11	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-03-022-2-11	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-03-022-2-11	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-03-022-2-11	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-03-022-2-11	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-03-022-2-11	TT	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-03-022-2-11	TT	TT	CC	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._RUQ_91	TT	_	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AMAZ_3_/2 RUQ_91

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._AMAZ_3_/2

identical
19 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P97 225

Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 5 > FP

Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 14 > F

Dapeng Zhang, 2016

4._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 1 > FP

Dapeng Zhang, 2016

5._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 15

Dapeng Zhang, 2016

6._AMAZ_3_/2

identical
18 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3211 13

Dapeng Zhang, 2016

7._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 12

Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 9

Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 8

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 16

Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 7

Dapeng Zhang, 2016

12._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

13._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

14._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

16._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

17._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

18._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP2

19._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

20._AMAZ_3_/2 GC-03-022-2-11

96.7 %
30 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

21._AMAZ_3_/2 GC-03-022-2-11

96.7 %
30 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

22._AMAZ_3_/2 RUQ_91

94.7 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP329
11	TcSNP364	12	TcSNP372	13	TcSNP529	14	TcSNP534	15	TcSNP577
16	TcSNP591	17	TcSNP602	18	TcSNP619	19	TcSNP702	20	TcSNP723
21	TcSNP799	22	TcSNP878	23	TcSNP891	24	TcSNP998	25	TcSNP1060
26	TcSNP1063	27	TcSNP1111	28	TcSNP1126	29	TcSNP1253	30	TcSNP1309
31	TcSNP1458	32	TcSNP1484